1.Sabatier P, Lechner M, Guzmán UH, Beusch CM, Zeng X, Wang L, Izaguirre F, Seth A, Gritsenko O, Rodin S, Grinnemo KH, Ye Z#, Olsen JV#. Global analysis of protein turnover dynamics in single cells. Cell. 2025. 188(9):2433. (IF = 42.5)
2.Ye Z#*, Sabatier P#, van der Hoeven L, Lechner MY, Phlairaharn T, Guzman UH, Liu Z, Huang H, Huang M, Li X, Hartlmayr D, Izaguirre F, Seth A, Joshi HJ, Rodin S, Grinnemo KH, H?rning OB, Bekker-Jensen DB, Bache N, Olsen JV*. Enhanced sensitivity and scalability with a Chip-Tip workflow enables deep single-cell proteomics. Nature Methods, 2025: 1-11. (IF = 32.1)
3.Guzman UH#, Martinez-Val A#, Ye Z#, Damoc E, Arrey TN, Pashkova A, Renuse S, Denisov E, Petzoldt J, Peterson AC, Harking F, ?stergaard O, Rydbirk R, Aznar S, Stewart H, Xuan Y, Hermanson D, Horning S, Hock C, Makarov A, Zabrouskov V, Olsen JV*. Ultra-fast label-free quantification and comprehensive proteome coverage with narrow-window data-independent acquisition. Nature Biotechnology 2024,1-12. (IF = 41.7)
4.Ye Z#*, Sabatier P#, Martin-Gonzalez J, Eguchi A, Lechner M, ?stergaard O, Xie J, Guo Y, Schultz L, Truffer R, Bekker-Jensen DB, Bache N, Olsen JV*. One-Tip enables comprehensive proteome coverage in minimal cells and single zygotes. Nature Communications 2024, 15(1): 2474. (IF = 15.7,ESI)
5.Ye Z#, Kilic G#, Dabelsteen S#, Marinova IN, Th?fner JFB, Levann AMR, Bagdonaite I, Vakhrushev S, Brakebusch CH, Olsen J* and Wandall H*. Loss of TGF-βRII signaling induces invasive tissue growth in a human organotypic skin model. Science Signaling 2022, 15(761). (IF = 7.3)
6.Ye Z#, Batth T, Rüther PL and Olsen J. A deeper look at carrier proteome effects for single-cell proteomics. (2022) Communications Biology, 10.1038/s42003-022-03095-4 (IF = 6.55)
7.Mao Y, Wang S, Zhao Y, Konstantinidi A, Sun L, Ye Z* and Vakhrushev SY*. Systematic Evaluation of Fragmentation Methods for Unlabeled and Isobaric Mass Tag-Labeled O-Glycopeptides. (2021) Anal Chem 93:11167-11175. (IF =8.01)
8.Ye Z# and Vakhrushev SY. The Role of Data-Independent Acquisition for Glycoproteomics. (2021) Mol Cell Proteomics 20:100042. (IF = 5.91)
9.Ye Z#, Mao Y, Clausen H and Vakhrushev SY. Glyco-DIA: a method for quantitative O-glycoproteomics with in silico-boosted glycopeptide libraries. (2019) Nat Methods 16:902-910. (IF = 30.82)
10.Zhang C#, Ye Z#, Xue P, Shu Q, Zhou Y, Ji Y, Fu Y, Wang J and Yang F. Evaluation of Different N-Glycopeptide Enrichment Methods for N-Glycosylation Sites Mapping in Mouse Brain. (2016) J Proteome Res 15:2960-8. (IF = 4.27)